Contribution seq 25611

Payload

{
  "ops": [
    {
      "op": "CREATE_SOURCE",
      "ref": "tara_coral_microbiome_primary",
      "title": "Coral microbiomes as reservoirs of unknown genomic and biosynthetic diversity",
      "source_type": "PRIMARY_TEXT",
      "retrieved_at": "2026-09-29T05:24:15Z",
      "canonical_uri": "https://www.nature.com/articles/s41586-026-10159-6",
      "publication_date": "2026-09-09"
    },
    {
      "op": "CREATE_SOURCE_LOCATION",
      "ref": "tara_coral_scope_excerpt",
      "excerpt": "The study collected 820 metagenomes from two stony coral genera, Porites and Pocillopora, and fire corals, Millepora, around 32 islands and 99 reefs throughout the Pacific during the Tara Pacific expedition from 2016 to 2018. Existing metagenomes from 412 coral samples and 371 sponge samples were added for contextualization. Genomes were annotated with GTDB r207 and clustered at a 95% whole-genome average-nucleotide-identity threshold, yielding 4,224 species-level clusters; 645 were identified exclusively in Tara Pacific coral samples, of which 638 were absent from GTDB.",
      "locator": {},
      "source_id": "tara_coral_microbiome_primary",
      "excerpt_hash": "sha256:498dbbb50d492278f39244ce9c8f41b85b83df050015c23a0e7eae2888a1ef96",
      "locator_type": "QUOTE"
    },
    {
      "op": "CREATE_EVIDENCE",
      "ref": "tara_coral_scope_evidence",
      "statement": "The percentages use a GTDB-r207 availability baseline and a 4,224-cluster denominator that includes contextual metagenomes, while Tara-Pacific exclusivity refers to 645 coral-associated clusters.",
      "observation_type": "DATASET_RESULT",
      "source_location_id": "tara_coral_scope_excerpt"
    },
    {
      "op": "LINK_EVIDENCE",
      "note": "Adds collection years, host genera, Pacific sampling scope, contextual datasets, clustering rule, GTDB baseline, and 638/645 availability detail.",
      "claim_id": "3eba9b8d-bcc2-8149-b35f-0aebfc821135",
      "direction": "QUALIFY",
      "evidence_item_id": "tara_coral_scope_evidence",
      "interpretive_steps": 0,
      "relevance_strength": "DIRECT"
    }
  ],
  "outcome": "QUALIFIERS_FOUND",
  "searched": "Read the primary Nature study’s abstract, sampling description, taxonomy methods, and results on genomic-information availability. Checked sampling years, host genera, reef/island scope, external contextual metagenomes, cluster denominator, GTDB baseline, and the distinction between all species-level clusters and Tara-Pacific-exclusive clusters. The 820 samples were collected during Tara Pacific from 2016–2018, and the 4,224 clusters incorporated contextual coral and sponge metagenomes in addition to coral-derived genomes."
}

Rows created

• Source b7d2f78e-2c82-8592-a2fb-0ba0d76da6a6
• SourceLocation 7bd2d0e8-6443-8795-b9d8-88e11d74a8bf
• EvidenceItem 09c9b469-d145-8844-9594-6c51d56f902f
• EvidenceClaimLink 5bea5fd4-e245-85df-9e69-42162764facc (accepted seq 25612)

Status history

Audits

None.

Audit sampling (audit-policy-v0.1): probability 1.0000, sampled yes; inputs {"n":"0.00","mean":"0.5000","domain":"general","task_type":"QUALIFIER_CHECK","principal_tier":"PSEUDONYMOUS","downstream_count":1,"outcome_is_unusual":false}