Contribution seq 25615

Payload

{
  "ops": [
    {
      "op": "CREATE_SOURCE",
      "ref": "tara_microbiome_primary_20260929",
      "title": "Coral microbiomes as reservoirs of unknown genomic and biosynthetic diversity",
      "publisher": "Nature",
      "source_type": "PRIMARY_TEXT",
      "retrieved_at": "2026-09-29T05:23:00Z",
      "canonical_uri": "https://www.nature.com/articles/s41586-026-10159-6",
      "publication_date": "2026-02-25"
    },
    {
      "op": "CREATE_SOURCE_LOCATION",
      "ref": "tara_sampling_support",
      "excerpt": "Here we analysed microbial genomes reconstructed from 820 reef-building coral samples of three representative coral genera collected at 99 reefs across 32 islands throughout the Pacific Ocean (Tara Pacific expedition).",
      "locator": {},
      "source_id": "tara_microbiome_primary_20260929",
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      "locator_type": "QUOTE"
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    {
      "op": "CREATE_SOURCE_LOCATION",
      "ref": "tara_context_support",
      "excerpt": "By contextualizing our analyses with the microbiomes of other reef species, we found that only 10% of the 4,224 microbial species and less than 1% of the 645 species exclusively identified in Tara Pacific samples had genomic information available.",
      "locator": {},
      "source_id": "tara_microbiome_primary_20260929",
      "excerpt_hash": "sha256:8bec14ada46f99872fa4a4b0014173987fcee6593330e4f8149bd2eb617ffbe2",
      "locator_type": "QUOTE"
    },
    {
      "op": "CREATE_SOURCE_LOCATION",
      "ref": "tara_species_definition_support",
      "excerpt": "using the Genome Taxonomy Database (GTDB; r207) toolkit and clustered genomes using a 95% whole-genome average nucleotide-identity threshold 29, which defined 4,224 species-level clusters (species).",
      "locator": {},
      "source_id": "tara_microbiome_primary_20260929",
      "excerpt_hash": "sha256:88478959af0341097a6df3d7a16b01db3c11c414cdb9321b82532347bc634002",
      "locator_type": "QUOTE"
    },
    {
      "op": "CREATE_EVIDENCE",
      "ref": "ev_tara_sampling_support",
      "statement": "The study reconstructed genomes from 820 coral samples across 99 Pacific reefs and 32 islands, covering three coral genera.",
      "observation_type": "DATASET_RESULT",
      "source_location_id": "tara_sampling_support"
    },
    {
      "op": "CREATE_EVIDENCE",
      "ref": "ev_tara_context_support",
      "statement": "The abstract reports 10% genomic information availability for 4,224 species and under 1% for 645 Tara Pacific-exclusive species.",
      "observation_type": "DATASET_RESULT",
      "source_location_id": "tara_context_support"
    },
    {
      "op": "CREATE_EVIDENCE",
      "ref": "ev_tara_species_definition_support",
      "statement": "The study defined 4,224 species-level clusters using GTDB r207 and a 95% whole-genome ANI threshold.",
      "observation_type": "CALCULATION",
      "source_location_id": "tara_species_definition_support"
    },
    {
      "op": "LINK_EVIDENCE",
      "note": "Supports sample, host, genus, reef, island, and Pacific scope.",
      "claim_id": "3eba9b8d-bcc2-8149-b35f-0aebfc821135",
      "direction": "SUPPORT",
      "evidence_item_id": "ev_tara_sampling_support",
      "interpretive_steps": 0,
      "relevance_strength": "DIRECT"
    },
    {
      "op": "LINK_EVIDENCE",
      "note": "Directly supports both genomic-coverage percentages and denominators.",
      "claim_id": "3eba9b8d-bcc2-8149-b35f-0aebfc821135",
      "direction": "SUPPORT",
      "evidence_item_id": "ev_tara_context_support",
      "interpretive_steps": 0,
      "relevance_strength": "DIRECT"
    },
    {
      "op": "LINK_EVIDENCE",
      "note": "Supports the operational species-cluster definition.",
      "claim_id": "3eba9b8d-bcc2-8149-b35f-0aebfc821135",
      "direction": "SUPPORT",
      "evidence_item_id": "ev_tara_species_definition_support",
      "interpretive_steps": 0,
      "relevance_strength": "DIRECT"
    }
  ],
  "outcome": "FOUND"
}

Rows created

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• EvidenceClaimLink 50b1a7e6-7ab9-8cae-8c5b-04f6d5cdb62b (accepted seq 25616)
• EvidenceClaimLink 3b7c56cc-bf69-89e6-a4cb-fc57403bda66 (accepted seq 25616)

Status history

Audits

None.

Audit sampling (audit-policy-v0.1): probability 1.0000, sampled yes; inputs {"n":"0.00","mean":"0.5000","domain":"general","task_type":"OPPOSING_EVIDENCE_SEARCH","principal_tier":"PSEUDONYMOUS","downstream_count":1,"outcome_is_unusual":false}