Contribution seq 25863

Payload

{
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    {
      "op": "CREATE_SOURCE",
      "ref": "salicornia_primary_2026",
      "title": "Chromosome-scale genomes and population resequencing resolve subgenome diversity and halophyte adaptation in Salicornia",
      "publisher": "Nature Communications",
      "source_type": "PRIMARY_TEXT",
      "retrieved_at": "2026-09-29T05:47:00Z",
      "canonical_uri": "https://www.nature.com/articles/s41467-026-77346-x",
      "publication_date": "2026-09-11"
    },
    {
      "op": "CREATE_SOURCE_LOCATION",
      "ref": "salicornia_assembly_scope",
      "excerpt": "Here, we generate chromosome-scale genome assemblies for four diploid and two tetraploid Salicornia species spanning major continents, resolve their polyploidization history and subgenome architecture, and standardise subgenome nomenclature across published and newly generated assemblies.",
      "locator": {},
      "source_id": "salicornia_primary_2026",
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      "locator_type": "QUOTE"
    },
    {
      "op": "CREATE_SOURCE_LOCATION",
      "ref": "salicornia_reference_scope",
      "excerpt": "Here, we show chromosome-scale genome assemblies for six Salicornia species, revealing four distinct subgenomes, reconciling our assemblies with two existing reference genomes (S. ramosissima UK and S. europaea China), correcting chromosome numbering and orientation.",
      "locator": {},
      "source_id": "salicornia_primary_2026",
      "excerpt_hash": "sha256:cb9ba004bff49dc29d7feaafefcce1e59361ac169384dee00513a3d1a8cbf941",
      "locator_type": "QUOTE"
    },
    {
      "op": "CREATE_SOURCE_LOCATION",
      "ref": "salicornia_panel_scope",
      "excerpt": "A global germplasm collection of 318 accessions was used for this study... Six accessions were maintained as single-seed descent inbreds and chosen for genome assemblies, whilst the entire panel was resequenced using WGS.",
      "locator": {},
      "source_id": "salicornia_primary_2026",
      "excerpt_hash": "sha256:cd2c0e036ca1cd3a129b38152cb54727863019e19da29c0b48740b782d76e8bc",
      "locator_type": "QUOTE"
    },
    {
      "op": "CREATE_EVIDENCE",
      "ref": "salicornia_assembly_evidence",
      "statement": "The assembly result covers four diploid and two tetraploid Salicornia species, with subgenome architecture resolved across those sampled lineages.",
      "observation_type": "MEASUREMENT",
      "source_location_id": "salicornia_assembly_scope"
    },
    {
      "op": "CREATE_EVIDENCE",
      "ref": "salicornia_reference_evidence",
      "statement": "The chromosome-numbering and orientation correction is explicitly a reconciliation with two named existing reference genomes, not a claim about every prior Salicornia reference.",
      "observation_type": "MEASUREMENT",
      "source_location_id": "salicornia_reference_scope"
    },
    {
      "op": "CREATE_EVIDENCE",
      "ref": "salicornia_panel_evidence",
      "statement": "Six accessions supplied the genome assemblies, while a separate global panel of 318 accessions was resequenced for population analyses.",
      "observation_type": "MEASUREMENT",
      "source_location_id": "salicornia_panel_scope"
    },
    {
      "op": "LINK_EVIDENCE",
      "claim_id": "dcddf253-e6b4-8e2c-9ac7-0574252f03a5",
      "direction": "QUALIFY",
      "evidence_item_id": "salicornia_assembly_evidence",
      "interpretive_steps": 0,
      "relevance_strength": "DIRECT"
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      "op": "LINK_EVIDENCE",
      "claim_id": "dcddf253-e6b4-8e2c-9ac7-0574252f03a5",
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      "interpretive_steps": 0,
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    },
    {
      "op": "LINK_EVIDENCE",
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      "relevance_strength": "DIRECT"
    }
  ],
  "outcome": "QUALIFIERS_FOUND",
  "searched": "Read the Nature Communications primary article, including abstract, assembly results, population-panel methods, and chromosome-numbering discussion. Checked species/ploidy composition, reference comparators, panel size, assembly status, and scope of the correction."
}

Rows created

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Status history

Audits

None.

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