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Claim

Transcriptomic analysis associated growth under extreme CO2 scarcity in the simulated Enceladus chemistry with overexpression of the reductive acetyl-CoA CO2-fixation pathway.

Type OBSERVATIONAL · truth-evaluable: yes · status at snapshot: ACTIVE · created seq 23962 · qualifiers {"location":"Simulated Enceladus soda-ocean chemistry","population":"Growing Methanothermococcus okinawensis cells"}

Referenced 156 times: checked 1, looked up by assistants 0, viewed 109, shared 46. A count of attention, not evidence.

Topics

Biology · 1efd24fe Astronomy and space · 1efd24fe

Assessment

Supported

Score: 0.8581 under ledger-default@0.3.0 at snapshot 27745

2 of 4 review checks done · 1 counted · 1 by the author only

1 independent evidence lineage · review checks 1 of 4 · stability MEDIUM

Main unresolved issue: 2 counted evidence items have no independence review; repeats of one origin may be counted as several coverage:48143610-53d9-8e31-a2a5-31c850898c02

Not yet independently audited.Evidence reviewed so far supports this claim, but only 1 of 4 review checks has been done.

Why?

Strongest counted support: The abstract links CO2 scarcity response to overexpression of the reductive acetyl-CoA fixation pathway. weight 1.800000 evidence

Suppressed as dependent: The quoted passage directly reports transcriptomic association of extreme CO2-scarcity growth with overexpression of the reductive acetyl-CoA CO2-fixation pathway in simulated Enceladus chemistry.

Review gaps: qualifiers reviewed, opposing search done, independence reviewed

What would most change this: One independent, direct measurement that contradicts this claim would move it from Supported to Unresolved.

Hide calculation

0.8581 under ledger-default@0.3.0 at snapshot 27745 · state Supported · Review checks: 1 of 4 · stability MEDIUM · 2 sources, 1 independent lineage

Model ledger-default@0.3.0 (the default model, not the answer) · snapshot 27745 · trace sha256:503cebad894b3560d12b87dcead5b0f42371b2843990d9fdf2c163ecc0ace7cd

Last changed at entry seq 25702; nothing logged since has borne on this claim.

How the number was reached

Each counted link is weighed by multiplying the factors the model declares; a factor it does not declare is not shown. Every factor name below links to what that number means.

LinkWorkingWeightCounted as
e540737b support relevance DIRECT 2.0 × observation DIRECT_TEXT 0.9 × interpretation 0 steps, 1 − 0.15 × 0 1.000000 × authenticity UNVERIFIED 1.0 × extraction UNVERIFIED 1.0 × provenance INDEPENDENT 1.0 × edition NAMED_OR_UNRELATED 1 1.800000 1.800000
709ac809 support relevance DIRECT 2.0 × observation DIRECT_TEXT 0.9 × interpretation 0 steps, 1 − 0.15 × 0 1.000000 × authenticity UNVERIFIED 1.0 × extraction UNVERIFIED 1.0 × provenance INDEPENDENT 1.0 × edition NAMED_OR_UNRELATED 1 1.800000 0.000000 (dependent strongest only, kept e540737b)

prior 0.50 → log-odds 0.000000 + 1.800000 (the counted weights) = 1.800000 → probability 0.8581

Under neighbouring settings of the same model: 0.7790 to 0.9121, a spread of 0.1331.

Half-even rounding, six places for weights and four for the probability. The same inputs under the same model reproduce this exactly; that is what the trace hash above is for. How a score is worked out explains every factor, why it is there, and what the model sets it to.

Your view

Sign in to register whether you agree or disagree. A view is yours alone and never changes the assessment.

Registered views

Nobody has registered a view yet.

Registered views are personal belief, not evidence: they never change Galedra's assessment. Affiliations are self-declared and shown only for groups of 5 or more.

Checked as part of

Statements this claim was broken out of. The claim is scored on its own; a statement's reading only counts its claims.

Evidence for

Evidence against

None.

Qualifications

None.

Suppressed as dependent

EvidenceGroupKept instead
f6b378afe540737b

Inferences

Concluded from

None.

Used as a premise in

None.

An inference is interpretation, not evidence: it never changes the assessment of its conclusion. Each premise is a claim with its own evidence.

Threads

None. Threads are for disagreements about how a determination was made — a statement whose figures are not in the passage it rests on, two sources that may share an origin. Something about the world belongs in the evidence above.

Claim edges

None. Edges are stored and displayed; v0.1 does not propagate probability across them.

Review checklist

Review checks: 1 of 4

2 checks by this claim's own author, alongside the independent review above. 1 QUALIFIER CHECK · 1 EVIDENCE VERIFICATION. A check by the person who recorded a claim does not raise its review coverage.

CheckDoneBy
qualifiers reviewedno
opposing search doneno
independence reviewedno
primary source reviewedyese540737b, 709ac809

Summary

Supported. The main support is: The abstract links CO2 scarcity response to overexpression of the reductive acetyl-CoA fixation pathway. 65f24825

1 further item repeats the same origin and is not independent evidence. f6b378af

Review checks: 1 of 4. coverage:48143610-53d9-8e31-a2a5-31c850898c02

Generated by stub-v0.1; every sentence cites graph ids.

Contribution history

seqeventdetail
23962APPENDED
23963ACCEPTAUTOMATIC_AFTER_VALIDATION
23978LINK_EVIDENCEby 1efd24fe (accepted)
24636TASK_RESULTby 1efd24fe (accepted)

Score trace

{
  "claim": "48143610-53d9-8e31-a2a5-31c850898c02",
  "links": [
    {
      "link": "02ffe8c5-ed5c-817b-ba01-db63e540737b",
      "group": null,
      "edition": "NAMED_OR_UNRELATED",
      "evidence": "2caf6c96-b0de-8c8d-91be-2c5e65f24825",
      "direction": "SUPPORT",
      "magnitude": "1.800000",
      "relevance": "DIRECT",
      "extraction": "UNVERIFIED",
      "provenance": "INDEPENDENT",
      "observation": "DIRECT_TEXT",
      "source_type": "PRIMARY_TEXT",
      "authenticity": "UNVERIFIED",
      "audit_confirmed": false,
      "effective_weight": "1.800000",
      "interpretive_steps": 0
    },
    {
      "kept": "02ffe8c5-ed5c-817b-ba01-db63e540737b",
      "link": "1c02d4ae-9f85-8637-9775-6237709ac809",
      "group": null,
      "reason": "dependent_strongest_only",
      "edition": "NAMED_OR_UNRELATED",
      "evidence": "aa9de85a-83ee-84f6-be52-96cff6b378af",
      "direction": "SUPPORT",
      "magnitude": "1.800000",
      "relevance": "DIRECT",
      "extraction": "UNVERIFIED",
      "provenance": "INDEPENDENT",
      "observation": "DIRECT_TEXT",
      "source_type": "PRIMARY_TEXT",
      "authenticity": "UNVERIFIED",
      "audit_confirmed": false,
      "effective_weight": "0.000000",
      "interpretive_steps": 0
    }
  ],
  "model": "ledger-default@0.3.0",
  "prior": "0.50",
  "variants": {
    "spread": "0.1331",
    "permissive": "0.9121",
    "conservative": "0.7790"
  },
  "code_hash": "sha256:c61a6fdf35a754a0d7e958df149036a083c0eaeb7d2d2e52704ec32b0c36def7",
  "contested": false,
  "stability": "MEDIUM",
  "claim_type": "OBSERVATIONAL",
  "config_hash": "sha256:86768038080b8ab5233f1e4b7aba10af05b5bb44caa432095150b90e81209809",
  "probability": "0.8581",
  "provisional": true,
  "evidence_sum": "1.800000",
  "snapshot_seq": 25702,
  "prior_log_odds": "0.000000",
  "support_groups": 1,
  "model_dependent": false,
  "review_coverage": "0.25",
  "truth_evaluable": true,
  "assessment_state": "SUPPORTED",
  "review_checklist": {
    "qualifiers_reviewed": {
      "by": [],
      "ok": false
    },
    "opposing_search_done": {
      "by": [],
      "ok": false
    },
    "independence_reviewed": {
      "by": [],
      "ok": false
    },
    "primary_source_reviewed": {
      "by": [
        "02ffe8c5-ed5c-817b-ba01-db63e540737b",
        "1c02d4ae-9f85-8637-9775-6237709ac809"
      ],
      "ok": true
    }
  },
  "contradict_groups": 0,
  "rounding_boundary": false,
  "posterior_log_odds": "1.800000",
  "not_applicable_reason": null,
  "independence_unreviewed": 2
}