Galedra
Sign in Sign up

Claim

The percentages describe genomic information availability for 4,224 species-level microbial clusters reconstructed from 820 reef-building coral samples across 99 Pacific reefs and 32 islands, including 645 clusters exclusive to Tara Pacific; the species denominator was defined using GTDB r207 and a 95% whole-genome ANI threshold.

Type QUANTITATIVE · truth-evaluable: yes · status at snapshot: ACTIVE · created seq 25605

45 words; atomic claims are usually under 25a conjunction joins clauses that may be separately evaluablea comma-separated series may list several propositions

Referenced 96 times: checked 0, looked up by assistants 0, viewed 96, shared 0. A count of attention, not evidence.

Topics

Not filed under any topic yet.

Assessment

Supported

Score: 0.9933 under ledger-default@0.3.0 at snapshot 27745

3 of 4 review checks done · 1 counted · 2 by the author only

3 independent evidence lineages · review checks 1 of 4 · stability HIGH

Main unresolved issue: 4 counted evidence items have no independence review; repeats of one origin may be counted as several coverage:3eba9b8d-bcc2-8149-b35f-0aebfc821135

Not yet independently audited.Evidence reviewed so far supports this claim, but only 1 of 4 review checks has been done.

Related: NARROWS outgoing: Supported

Why?

Strongest counted support: The study reconstructed genomes from 820 coral samples across 99 Pacific reefs and 32 islands, covering three coral genera. weight 1.800000 evidence

Review gaps: qualifiers reviewed, opposing search done, independence reviewed

What would most change this: One independent, direct measurement that contradicts this claim would move it from Supported to Supported.

Hide calculation

0.9933 under ledger-default@0.3.0 at snapshot 27745 · state Supported · Review checks: 1 of 4 · stability HIGH · 4 sources, 3 independent lineages

Model ledger-default@0.3.0 (the default model, not the answer) · snapshot 27745 · trace sha256:a50a4bb84cae919f834894b0557b25ee9be960ea3db550b5a728e05d70671bd0

Last changed at entry seq 25616; nothing logged since has borne on this claim.

How the number was reached

Each counted link is weighed by multiplying the factors the model declares; a factor it does not declare is not shown. Every factor name below links to what that number means.

LinkWorkingWeightCounted as
403bda66 support relevance DIRECT 2.0 × observation CALCULATION 0.7 × interpretation 0 steps, 1 − 0.15 × 0 1.000000 × authenticity UNVERIFIED 1.0 × extraction UNVERIFIED 1.0 × provenance INDEPENDENT 1.0 × edition NAMED_OR_UNRELATED 1 1.400000 1.400000
205bee3a support relevance DIRECT 2.0 × observation DATASET_RESULT 0.9 × interpretation 0 steps, 1 − 0.15 × 0 1.000000 × authenticity UNVERIFIED 1.0 × extraction UNVERIFIED 1.0 × provenance INDEPENDENT 1.0 × edition NAMED_OR_UNRELATED 1 1.800000 1.800000
d5cdb62b support relevance DIRECT 2.0 × observation DATASET_RESULT 0.9 × interpretation 0 steps, 1 − 0.15 × 0 1.000000 × authenticity UNVERIFIED 1.0 × extraction UNVERIFIED 1.0 × provenance INDEPENDENT 1.0 × edition NAMED_OR_UNRELATED 1 1.800000 1.800000
2764facc qualify relevance DIRECT 2.0 × observation DATASET_RESULT 0.9 × interpretation 0 steps, 1 − 0.15 × 0 1.000000 × authenticity UNVERIFIED 1.0 × extraction UNVERIFIED 1.0 × provenance INDEPENDENT 1.0 × edition NAMED_OR_UNRELATED 1 1.800000 0.000000 (non directional)

prior 0.50 → log-odds 0.000000 + 5.000000 (the counted weights) = 5.000000 → probability 0.9933

Under neighbouring settings of the same model: 0.9707 to 0.9985, a spread of 0.0278.

Half-even rounding, six places for weights and four for the probability. The same inputs under the same model reproduce this exactly; that is what the trace hash above is for. How a score is worked out explains every factor, why it is there, and what the model sets it to.

Your view

Sign in to register whether you agree or disagree. A view is yours alone and never changes the assessment.

Registered views

Nobody has registered a view yet.

Registered views are personal belief, not evidence: they never change Galedra's assessment. Affiliations are self-declared and shown only for groups of 5 or more.

Evidence for

Evidence against

None.

Qualifications

Suppressed as dependent

None.

Inferences

Concluded from

None.

Used as a premise in

None.

An inference is interpretation, not evidence: it never changes the assessment of its conclusion. Each premise is a claim with its own evidence.

Threads

None. Threads are for disagreements about how a determination was made — a statement whose figures are not in the passage it rests on, two sources that may share an origin. Something about the world belongs in the evidence above.

Claim edges

FromRelationshipTo
fc821135NARROWS64e59e21

Review checklist

Review checks: 1 of 4

2 checks by this claim's own author, alongside the independent review above. 1 OPPOSING EVIDENCE SEARCH · 1 QUALIFIER CHECK. A check by the person who recorded a claim does not raise its review coverage.

CheckDoneBy
qualifiers reviewedno
opposing search doneno
independence reviewedno
primary source reviewedyes403bda66, 205bee3a, d5cdb62b, 2764facc

Summary

Supported. The main support is: The study defined 4,224 species-level clusters using GTDB r207 and a 95% whole-genome ANI threshold. 44cf6591

Qualifier: The percentages use a GTDB-r207 availability baseline and a 4,224-cluster denominator that includes contextual metagenomes, while Tara-Pacific exclusivity refers to 645 coral-associated clusters. d56f902f

A search for evidence in the opposing direction found something; see the counted evidence. bd28ef95

Review checks: 1 of 4. coverage:3eba9b8d-bcc2-8149-b35f-0aebfc821135

Generated by stub-v0.1; every sentence cites graph ids.

Contribution history

seqeventdetail
25605APPENDED
25606ACCEPTAUTOMATIC_AFTER_VALIDATION
25611TASK_RESULTby 1efd24fe (accepted)
25615TASK_RESULTby 1efd24fe (accepted)

Score trace

{
  "claim": "3eba9b8d-bcc2-8149-b35f-0aebfc821135",
  "links": [
    {
      "link": "3b7c56cc-bf69-89e6-a4cb-fc57403bda66",
      "group": null,
      "edition": "NAMED_OR_UNRELATED",
      "evidence": "a32ee6d4-41c9-82f8-a54f-6f4e44cf6591",
      "direction": "SUPPORT",
      "magnitude": "1.400000",
      "relevance": "DIRECT",
      "extraction": "UNVERIFIED",
      "provenance": "INDEPENDENT",
      "observation": "CALCULATION",
      "source_type": "PRIMARY_TEXT",
      "authenticity": "UNVERIFIED",
      "audit_confirmed": false,
      "effective_weight": "1.400000",
      "interpretive_steps": 0
    },
    {
      "link": "47a0f347-87bc-8be6-833e-8f7c205bee3a",
      "group": null,
      "edition": "NAMED_OR_UNRELATED",
      "evidence": "9f080a95-6719-8b22-91ed-4db4edea79d6",
      "direction": "SUPPORT",
      "magnitude": "1.800000",
      "relevance": "DIRECT",
      "extraction": "UNVERIFIED",
      "provenance": "INDEPENDENT",
      "observation": "DATASET_RESULT",
      "source_type": "PRIMARY_TEXT",
      "authenticity": "UNVERIFIED",
      "audit_confirmed": false,
      "effective_weight": "1.800000",
      "interpretive_steps": 0
    },
    {
      "link": "50b1a7e6-7ab9-8cae-8c5b-04f6d5cdb62b",
      "group": null,
      "edition": "NAMED_OR_UNRELATED",
      "evidence": "1b9e30a3-1318-8a6e-8b4f-efe37b6296e0",
      "direction": "SUPPORT",
      "magnitude": "1.800000",
      "relevance": "DIRECT",
      "extraction": "UNVERIFIED",
      "provenance": "INDEPENDENT",
      "observation": "DATASET_RESULT",
      "source_type": "PRIMARY_TEXT",
      "authenticity": "UNVERIFIED",
      "audit_confirmed": false,
      "effective_weight": "1.800000",
      "interpretive_steps": 0
    },
    {
      "link": "5bea5fd4-e245-85df-9e69-42162764facc",
      "group": null,
      "reason": "non_directional",
      "edition": "NAMED_OR_UNRELATED",
      "evidence": "09c9b469-d145-8844-9594-6c51d56f902f",
      "direction": "QUALIFY",
      "magnitude": "1.800000",
      "relevance": "DIRECT",
      "extraction": "UNVERIFIED",
      "provenance": "INDEPENDENT",
      "observation": "DATASET_RESULT",
      "source_type": "PRIMARY_TEXT",
      "authenticity": "UNVERIFIED",
      "audit_confirmed": false,
      "effective_weight": "0.000000",
      "interpretive_steps": 0
    }
  ],
  "model": "ledger-default@0.3.0",
  "prior": "0.50",
  "variants": {
    "spread": "0.0278",
    "permissive": "0.9985",
    "conservative": "0.9707"
  },
  "code_hash": "sha256:c61a6fdf35a754a0d7e958df149036a083c0eaeb7d2d2e52704ec32b0c36def7",
  "contested": false,
  "stability": "HIGH",
  "claim_type": "QUANTITATIVE",
  "config_hash": "sha256:86768038080b8ab5233f1e4b7aba10af05b5bb44caa432095150b90e81209809",
  "probability": "0.9933",
  "provisional": true,
  "evidence_sum": "5.000000",
  "snapshot_seq": 25616,
  "prior_log_odds": "0.000000",
  "support_groups": 3,
  "model_dependent": false,
  "review_coverage": "0.25",
  "truth_evaluable": true,
  "assessment_state": "SUPPORTED",
  "review_checklist": {
    "qualifiers_reviewed": {
      "by": [],
      "ok": false
    },
    "opposing_search_done": {
      "by": [],
      "ok": false
    },
    "independence_reviewed": {
      "by": [],
      "ok": false
    },
    "primary_source_reviewed": {
      "by": [
        "3b7c56cc-bf69-89e6-a4cb-fc57403bda66",
        "47a0f347-87bc-8be6-833e-8f7c205bee3a",
        "50b1a7e6-7ab9-8cae-8c5b-04f6d5cdb62b",
        "5bea5fd4-e245-85df-9e69-42162764facc"
      ],
      "ok": true
    }
  },
  "contradict_groups": 0,
  "rounding_boundary": false,
  "posterior_log_odds": "5.000000",
  "not_applicable_reason": null,
  "independence_unreviewed": 4
}