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Claim

Chromosome-scale assemblies of six Salicornia species revealed four distinct subgenomes and enabled correction of chromosome numbering and orientation relative to existing references.

Type OBSERVATIONAL · truth-evaluable: yes · status at snapshot: ACTIVE · created seq 18423 · qualifiers {"population":"Six Salicornia species and two existing reference genomes."}

a conjunction joins clauses that may be separately evaluable

Referenced 29 times: checked 2, looked up by assistants 0, viewed 17, shared 10. A count of attention, not evidence.

Topics

Biology · 1efd24fe

Assessment

Supported

Score: 0.9487 under ledger-default@0.3.0 at snapshot 27745

2 of 4 review checks done · 1 counted · 1 by the author only

2 independent evidence lineages · review checks 1 of 4 · stability HIGH

Main unresolved issue: 7 counted evidence items have no independence review; repeats of one origin may be counted as several coverage:dcddf253-e6b4-8e2c-9ac7-0574252f03a5

Not yet independently audited.Evidence reviewed so far supports this claim, but only 1 of 4 review checks has been done.A quoted passage from phys.org was not found on the page when Galedra fetched it.

Why?

Strongest counted support: The study reports six chromosome-scale Salicornia assemblies revealing four distinct subgenomes and correcting chromosome numbering and orientation. weight 2.000000 evidence

Suppressed as dependent: The excerpt directly reports six chromosome-scale Salicornia assemblies, four subgenomes, and corrected chromosome numbering and orientation.; The study reports a chromosome-6A population-genetic contrast and identifies an OSCA channel gene as a candidate osmotic-adaptation locus.

Review gaps: qualifiers reviewed, opposing search done, independence reviewed

What would most change this: One independent, direct measurement that contradicts this claim would move it from Supported to Leans supported.

Hide calculation

0.9487 under ledger-default@0.3.0 at snapshot 27745 · state Supported · Review checks: 1 of 4 · stability HIGH · 7 sources, 2 independent lineages

Model ledger-default@0.3.0 (the default model, not the answer) · snapshot 27745 · trace sha256:b248b406dd09f368b39ac10f3011910be5eb3ceeee9f2f12b94199ac37ed70fc

Last changed at entry seq 25874; nothing logged since has borne on this claim.

How the number was reached

Each counted link is weighed by multiplying the factors the model declares; a factor it does not declare is not shown. Every factor name below links to what that number means.

LinkWorkingWeightCounted as
ad99f3d5 support relevance DIRECT 2.0 × observation DIRECT_TEXT 0.9 × interpretation 0 steps, 1 − 0.15 × 0 1.000000 × authenticity UNVERIFIED 1.0 × extraction UNVERIFIED 1.0 × provenance INDEPENDENT 1.0 × edition NAMED_OR_UNRELATED 1 1.800000 0.000000 (dependent strongest only, kept 3c06cbd6)
18175c2a support relevance STRONG 1.2 × observation DIRECT_TEXT 0.9 × interpretation 1 step, 1 − 0.15 × 1 0.850000 × authenticity UNVERIFIED 1.0 × extraction UNVERIFIED 1.0 × provenance INDEPENDENT 1.0 × edition NAMED_OR_UNRELATED 1 0.918000 0.918000
6fdedb07 qualify relevance DIRECT 2.0 × observation MEASUREMENT 1.0 × interpretation 0 steps, 1 − 0.15 × 0 1.000000 × authenticity UNVERIFIED 1.0 × extraction UNVERIFIED 1.0 × provenance INDEPENDENT 1.0 × edition NAMED_OR_UNRELATED 1 2.000000 0.000000 (non directional)
ed52eade support relevance DIRECT 2.0 × observation MEASUREMENT 1.0 × interpretation 0 steps, 1 − 0.15 × 0 1.000000 × authenticity UNVERIFIED 1.0 × extraction UNVERIFIED 1.0 × provenance INDEPENDENT 1.0 × edition NAMED_OR_UNRELATED 1 2.000000 0.000000 (dependent strongest only, kept 3c06cbd6)
6adfa2ad qualify relevance DIRECT 2.0 × observation MEASUREMENT 1.0 × interpretation 0 steps, 1 − 0.15 × 0 1.000000 × authenticity UNVERIFIED 1.0 × extraction UNVERIFIED 1.0 × provenance INDEPENDENT 1.0 × edition NAMED_OR_UNRELATED 1 2.000000 0.000000 (non directional)
3c06cbd6 support relevance DIRECT 2.0 × observation MEASUREMENT 1.0 × interpretation 0 steps, 1 − 0.15 × 0 1.000000 × authenticity UNVERIFIED 1.0 × extraction UNVERIFIED 1.0 × provenance INDEPENDENT 1.0 × edition NAMED_OR_UNRELATED 1 2.000000 2.000000
b6309f25 qualify relevance DIRECT 2.0 × observation MEASUREMENT 1.0 × interpretation 0 steps, 1 − 0.15 × 0 1.000000 × authenticity UNVERIFIED 1.0 × extraction UNVERIFIED 1.0 × provenance INDEPENDENT 1.0 × edition NAMED_OR_UNRELATED 1 2.000000 0.000000 (non directional)

prior 0.50 → log-odds 0.000000 + 2.918000 (the counted weights) = 2.918000 → probability 0.9487

Under neighbouring settings of the same model: 0.8852 to 0.9780, a spread of 0.0928.

Half-even rounding, six places for weights and four for the probability. The same inputs under the same model reproduce this exactly; that is what the trace hash above is for. How a score is worked out explains every factor, why it is there, and what the model sets it to.

Your view

Sign in to register whether you agree or disagree. A view is yours alone and never changes the assessment.

Registered views

Nobody has registered a view yet.

Registered views are personal belief, not evidence: they never change Galedra's assessment. Affiliations are self-declared and shown only for groups of 5 or more.

Checked as part of

Statements this claim was broken out of. The claim is scored on its own; a statement's reading only counts its claims.

Evidence for

Evidence against

None.

Qualifications

Suppressed as dependent

EvidenceGroupKept instead
a3e0ffa93c06cbd6
9282ed303c06cbd6

Inferences

Concluded from

None.

Used as a premise in

None.

An inference is interpretation, not evidence: it never changes the assessment of its conclusion. Each premise is a claim with its own evidence.

Threads

None. Threads are for disagreements about how a determination was made — a statement whose figures are not in the passage it rests on, two sources that may share an origin. Something about the world belongs in the evidence above.

Claim edges

None. Edges are stored and displayed; v0.1 does not propagate probability across them.

Review checklist

Review checks: 1 of 4

2 checks by this claim's own author, alongside the independent review above. 1 QUALIFIER CHECK · 1 EVIDENCE VERIFICATION. A check by the person who recorded a claim does not raise its review coverage.

CheckDoneBy
qualifiers reviewedno
opposing search doneno
independence reviewedno
primary source reviewedyesad99f3d5, 6fdedb07, ed52eade, 6adfa2ad, 3c06cbd6, b6309f25

Summary

Supported. The main support is: The secondary report corroborates that the Nature Communications study sequenced six Salicornia species and clarified their genomic relationships and salt-tolerance genetics. 4c9d2d75

2 further items repeat the same origin and are not independent evidence. a3e0ffa99282ed30

Qualifier: The assembly result covers four diploid and two tetraploid Salicornia species, with subgenome architecture resolved across those sampled lineages. 332c0b17

Qualifier: The chromosome-numbering and orientation correction is explicitly a reconciliation with two named existing reference genomes, not a claim about every prior Salicornia reference. f990791b

Qualifier: Six accessions supplied the genome assemblies, while a separate global panel of 318 accessions was resequenced for population analyses. c8b8c1b3

Review checks: 1 of 4. coverage:dcddf253-e6b4-8e2c-9ac7-0574252f03a5

Generated by stub-v0.1; every sentence cites graph ids.

Contribution history

seqeventdetail
18423APPENDED
18424ACCEPTAUTOMATIC_AFTER_VALIDATION
18435LINK_EVIDENCEby 1efd24fe (accepted)
18437LINK_EVIDENCEby 1efd24fe (accepted)
18453LINK_EVIDENCEby 1efd24fe (accepted)
24706TASK_RESULTby 1efd24fe (accepted)
25863TASK_RESULTby 1efd24fe (accepted)

Score trace

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      "link": "d914ea7d-f826-8796-b389-f81e6adfa2ad",
      "group": null,
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  "variants": {
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  "code_hash": "sha256:c61a6fdf35a754a0d7e958df149036a083c0eaeb7d2d2e52704ec32b0c36def7",
  "contested": false,
  "stability": "HIGH",
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  "review_coverage": "0.25",
  "truth_evaluable": true,
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  "review_checklist": {
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  "contradict_groups": 0,
  "rounding_boundary": false,
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  "independence_unreviewed": 7
}