Claim

Model ledger-default@0.1.0 ledger-strict@0.1.0 ledger-default@0.2.0 ledger-strict@0.2.0 ledger-default@0.3.0 (default) ledger-strict@0.3.0 Snapshot seq

Topics

Biology · 1efd24fe

Assessment

Why?

Strongest counted support: The study reports different overlap topologies, evolutionary transition rates, and nested-gene expression patterns across prokaryotic and eukaryotic genomes. weight 1.800000 evidence

Suppressed as dependent: The passage directly reports the genome counts, topology differences, lineage-specific gain/loss rates, and nested-gene expression patterns.

Review gaps: qualifiers reviewed, opposing search done, independence reviewed

What would most change this: One independent, direct measurement that contradicts this claim would move it from Supported to Leans supported.

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Checked as part of

Statements this claim was broken out of. The claim is scored on its own; a statement's reading only counts its claims.

• “A 2026 comparative analysis of overlapping genes across 253 prokaryotic, 115 plant, and 111 animal genomes found co-oriented overlaps predominant in...” · 1 claim · 29 September 2026

Evidence for

• The study reports different overlap topologies, evolutionary transition rates, and nested-gene expression patterns across prokaryotic and eukaryotic genomes.

  From Genome-wide comparative analysis reveals distinct evolutionary patterns of overlapping genes in prokaryotes and eukaryotes Read 2026-09-29 Relevance DIRECT Steps 0 Counted

• Independent coverage repeats the cross-lineage topology and gain/loss contrasts reported by the comparative analysis.

  From Overlapping Genes Evolve by Different Rules in Bacteria and Complex Life Read 2026-09-29 Relevance STRONG Steps 0 Counted

• The passage directly reports the genome counts, topology differences, lineage-specific gain/loss rates, and nested-gene expression patterns.

  From Genome-wide comparative analysis reveals distinct evolutionary patterns of overlapping genes in prokaryotes and eukaryotes Read 2026-09-29 Relevance DIRECT Steps 0 Counted

Evidence against

None.

Qualifications

None.

Suppressed as dependent

Evidence	Group	Kept instead
976a3e25		6ceeb510

Inferences

Concluded from

None.

Used as a premise in

None.

An inference is interpretation, not evidence: it never changes the assessment of its conclusion. Each premise is a claim with its own evidence.

Threads

None. Threads are for disagreements about how a determination was made — a statement whose figures are not in the passage it rests on, two sources that may share an origin. Something about the world belongs in the evidence above.

Claim edges

None. Edges are stored and displayed; v0.1 does not propagate probability across them.

Review checklist

Review checks: 1 of 4

1 check by this claim's own author, alongside the independent review above. 1 EVIDENCE VERIFICATION. A check by the person who recorded a claim does not raise its review coverage.

Check	Done	By
qualifiers reviewed	no
opposing search done	no
independence reviewed	no
primary source reviewed	yes	6ceeb510, e4d9cfd7

Summary

Contribution history

seq	event	detail
18506	APPENDED
18507	ACCEPT	AUTOMATIC_AFTER_VALIDATION
18514	LINK_EVIDENCE	by 1efd24fe (accepted)
18516	LINK_EVIDENCE	by 1efd24fe (accepted)
18532	TASK_RESULT	by 1efd24fe (accepted)

Score trace

{
  "claim": "f9c09f42-1839-8756-b6cb-eb755bab0cf2",
  "links": [
    {
      "link": "10c230ef-8417-893c-9082-6cad6ceeb510",
      "group": null,
      "edition": "NAMED_OR_UNRELATED",
      "evidence": "486a29cb-7bcb-8e33-b5e4-d9eeb9759ea0",
      "direction": "SUPPORT",
      "magnitude": "1.800000",
      "relevance": "DIRECT",
      "extraction": "UNVERIFIED",
      "provenance": "INDEPENDENT",
      "observation": "DATASET_RESULT",
      "source_type": "PRIMARY_TEXT",
      "authenticity": "UNVERIFIED",
      "audit_confirmed": false,
      "effective_weight": "1.800000",
      "interpretive_steps": 0
    },
    {
      "link": "27c4bfc3-0d1b-8161-aee2-0b6762fade4e",
      "group": null,
      "edition": "NAMED_OR_UNRELATED",
      "evidence": "7166fdb0-6b4a-8ad5-9ac6-28368e590762",
      "direction": "SUPPORT",
      "magnitude": "1.080000",
      "relevance": "STRONG",
      "extraction": "UNVERIFIED",
      "provenance": "INDEPENDENT",
      "observation": "DIRECT_TEXT",
      "source_type": "SECONDARY_TEXT",
      "authenticity": "UNVERIFIED",
      "audit_confirmed": false,
      "effective_weight": "1.080000",
      "interpretive_steps": 0
    },
    {
      "kept": "10c230ef-8417-893c-9082-6cad6ceeb510",
      "link": "b15d0a2a-7c36-8479-8081-51abe4d9cfd7",
      "group": null,
      "reason": "dependent_strongest_only",
      "edition": "NAMED_OR_UNRELATED",
      "evidence": "c0a5354c-2ffe-859d-a8b2-3e01976a3e25",
      "direction": "SUPPORT",
      "magnitude": "1.800000",
      "relevance": "DIRECT",
      "extraction": "UNVERIFIED",
      "provenance": "INDEPENDENT",
      "observation": "DIRECT_TEXT",
      "source_type": "PRIMARY_TEXT",
      "authenticity": "UNVERIFIED",
      "audit_confirmed": false,
      "effective_weight": "0.000000",
      "interpretive_steps": 0
    }
  ],
  "model": "ledger-default@0.3.0",
  "prior": "0.50",
  "variants": {
    "spread": "0.0944",
    "permissive": "0.9769",
    "conservative": "0.8825"
  },
  "code_hash": "sha256:c61a6fdf35a754a0d7e958df149036a083c0eaeb7d2d2e52704ec32b0c36def7",
  "contested": false,
  "stability": "HIGH",
  "claim_type": "COMPARATIVE",
  "config_hash": "sha256:86768038080b8ab5233f1e4b7aba10af05b5bb44caa432095150b90e81209809",
  "probability": "0.9468",
  "provisional": true,
  "evidence_sum": "2.880000",
  "snapshot_seq": 18533,
  "prior_log_odds": "0.000000",
  "support_groups": 2,
  "model_dependent": false,
  "review_coverage": "0.25",
  "truth_evaluable": true,
  "assessment_state": "SUPPORTED",
  "review_checklist": {
    "qualifiers_reviewed": {
      "by": [],
      "ok": false
    },
    "opposing_search_done": {
      "by": [],
      "ok": false
    },
    "independence_reviewed": {
      "by": [],
      "ok": false
    },
    "primary_source_reviewed": {
      "by": [
        "10c230ef-8417-893c-9082-6cad6ceeb510",
        "b15d0a2a-7c36-8479-8081-51abe4d9cfd7"
      ],
      "ok": true
    }
  },
  "contradict_groups": 0,
  "rounding_boundary": false,
  "posterior_log_odds": "2.880000",
  "not_applicable_reason": null,
  "independence_unreviewed": 3
}