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Claim

In cell-based, reconstituted-translation, and single-molecule experiments, N1-methylpseudouridine increased +1 ribosomal frameshifting at UUUC motifs in therapeutic mRNAs, while synonymous UUCC or UUUU substitutions eliminated the effect.

Type QUANTITATIVE · truth-evaluable: yes · status at snapshot: ACTIVE · created seq 17962

26 words; atomic claims are usually under 25a conjunction joins clauses that may be separately evaluablea comma-separated series may list several propositions

Referenced 145 times: checked 2, looked up by assistants 0, viewed 98, shared 45. A count of attention, not evidence.

Topics

Biology · 1efd24fe Technology · 1efd24fe

Assessment

Supported

Score: 0.9561 under ledger-default@0.3.0 at snapshot 27745

2 of 4 review checks done · 1 counted · 1 by the author only

2 independent evidence lineages · review checks 1 of 4 · stability HIGH

Main unresolved issue: 4 counted evidence items have no independence review; repeats of one origin may be counted as several coverage:a54a6139-7b71-8bd8-a2aa-ac7967d283bd

Not yet independently audited.Evidence reviewed so far supports this claim, but only 1 of 4 review checks has been done.A quoted passage from nature.com was not found on the page when Galedra fetched it.

Related: NARROWS incoming: Supported

Why?

Strongest counted support: The study reports modification-associated +1 frameshifting at UUUC motifs and suppression by synonymous codon replacement. weight 2.000000 evidence

Suppressed as dependent: The packet directly supports the experimental systems, UUUC frameshifting result, and suppression by UUCC or UUUU substitution.

Review gaps: qualifiers reviewed, opposing search done, independence reviewed

What would most change this: One independent, direct measurement that contradicts this claim would move it from Supported to Leans supported.

Hide calculation

0.9561 under ledger-default@0.3.0 at snapshot 27745 · state Supported · Review checks: 1 of 4 · stability HIGH · 4 sources, 2 independent lineages

Model ledger-default@0.3.0 (the default model, not the answer) · snapshot 27745 · trace sha256:a934643914be9cbb50cb096f841528f97e6b58f1ab26554f4a3158cc084c58fa

Last changed at entry seq 25820; nothing logged since has borne on this claim.

How the number was reached

Each counted link is weighed by multiplying the factors the model declares; a factor it does not declare is not shown. Every factor name below links to what that number means.

LinkWorkingWeightCounted as
00b5e8eb support relevance STRONG 1.2 × observation DIRECT_TEXT 0.9 × interpretation 0 steps, 1 − 0.15 × 0 1.000000 × authenticity UNVERIFIED 1.0 × extraction UNVERIFIED 1.0 × provenance INDEPENDENT 1.0 × edition NAMED_OR_UNRELATED 1 1.080000 1.080000
ea563e3a support relevance DIRECT 2.0 × observation MEASUREMENT 1.0 × interpretation 0 steps, 1 − 0.15 × 0 1.000000 × authenticity UNVERIFIED 1.0 × extraction UNVERIFIED 1.0 × provenance INDEPENDENT 1.0 × edition NAMED_OR_UNRELATED 1 2.000000 0.000000 (dependent strongest only, kept 7336d48c)
33ea034f qualify relevance DIRECT 2.0 × observation DIRECT_TEXT 0.9 × interpretation 0 steps, 1 − 0.15 × 0 1.000000 × authenticity UNVERIFIED 1.0 × extraction UNVERIFIED 1.0 × provenance INDEPENDENT 1.0 × edition NAMED_OR_UNRELATED 1 1.800000 0.000000 (non directional)
7336d48c support relevance DIRECT 2.0 × observation MEASUREMENT 1.0 × interpretation 0 steps, 1 − 0.15 × 0 1.000000 × authenticity UNVERIFIED 1.0 × extraction UNVERIFIED 1.0 × provenance INDEPENDENT 1.0 × edition NAMED_OR_UNRELATED 1 2.000000 2.000000

prior 0.50 → log-odds 0.000000 + 3.080000 (the counted weights) = 3.080000 → probability 0.9561

Under neighbouring settings of the same model: 0.8962 to 0.9821, a spread of 0.0859.

Half-even rounding, six places for weights and four for the probability. The same inputs under the same model reproduce this exactly; that is what the trace hash above is for. How a score is worked out explains every factor, why it is there, and what the model sets it to.

Your view

Sign in to register whether you agree or disagree. A view is yours alone and never changes the assessment.

Registered views

Nobody has registered a view yet.

Registered views are personal belief, not evidence: they never change Galedra's assessment. Affiliations are self-declared and shown only for groups of 5 or more.

Checked as part of

Statements this claim was broken out of. The claim is scored on its own; a statement's reading only counts its claims.

Evidence for

Evidence against

None.

Qualifications

Suppressed as dependent

EvidenceGroupKept instead
112bfea27336d48c

Inferences

Concluded from

None.

Used as a premise in

None.

An inference is interpretation, not evidence: it never changes the assessment of its conclusion. Each premise is a claim with its own evidence.

Threads

None. Threads are for disagreements about how a determination was made — a statement whose figures are not in the passage it rests on, two sources that may share an origin. Something about the world belongs in the evidence above.

Claim edges

FromRelationshipTo
9e7f19b5NARROWS67d283bd

Review checklist

Review checks: 1 of 4

2 checks by this claim's own author, alongside the independent review above. 1 QUALIFIER CHECK · 1 EVIDENCE VERIFICATION. A check by the person who recorded a claim does not raise its review coverage.

CheckDoneBy
qualifiers reviewedno
opposing search doneno
independence reviewedno
primary source reviewedyes00b5e8eb, ea563e3a, 33ea034f, 7336d48c

Summary

Supported. The main support is: An independent Nature study reports m1Psi-associated +1 frameshifting and shows synonymous targeting of slippery sequences reduces frameshifted products. 9211a8c6

1 further item repeats the same origin and is not independent evidence. 112bfea2

Qualifier: The primary study limits the cell-based result to HEK293T reporters built from BNT162b2 or mRNA-1273 constructs and directly reports suppression by synonymous UUCC replacement. 006c2819

A narrower version of this claim is supported. 9e7f19b5

Review checks: 1 of 4. coverage:a54a6139-7b71-8bd8-a2aa-ac7967d283bd

Generated by stub-v0.1; every sentence cites graph ids.

Contribution history

seqeventdetail
17962APPENDED
17963ACCEPTAUTOMATIC_AFTER_VALIDATION
17968LINK_EVIDENCEby 1efd24fe (accepted)
17987TASK_RESULTby 1efd24fe (accepted)
18014LINK_EVIDENCEby 1efd24fe (accepted)
25819TASK_RESULTby 1efd24fe (accepted)

Score trace

{
  "claim": "a54a6139-7b71-8bd8-a2aa-ac7967d283bd",
  "links": [
    {
      "link": "588b54a7-0982-8ce3-abb6-47f700b5e8eb",
      "group": null,
      "edition": "NAMED_OR_UNRELATED",
      "evidence": "afcd32a8-5adf-8b81-b12e-76e49211a8c6",
      "direction": "SUPPORT",
      "magnitude": "1.080000",
      "relevance": "STRONG",
      "extraction": "UNVERIFIED",
      "provenance": "INDEPENDENT",
      "observation": "DIRECT_TEXT",
      "source_type": "PRIMARY_TEXT",
      "authenticity": "UNVERIFIED",
      "audit_confirmed": false,
      "effective_weight": "1.080000",
      "interpretive_steps": 0
    },
    {
      "kept": "a0b7275a-0807-8b3b-b8cb-210d7336d48c",
      "link": "869e5742-a692-8852-8b16-d849ea563e3a",
      "group": null,
      "reason": "dependent_strongest_only",
      "edition": "NAMED_OR_UNRELATED",
      "evidence": "90aaf80d-b425-8562-afe2-d92c112bfea2",
      "direction": "SUPPORT",
      "magnitude": "2.000000",
      "relevance": "DIRECT",
      "extraction": "UNVERIFIED",
      "provenance": "INDEPENDENT",
      "observation": "MEASUREMENT",
      "source_type": "PRIMARY_TEXT",
      "authenticity": "UNVERIFIED",
      "audit_confirmed": false,
      "effective_weight": "0.000000",
      "interpretive_steps": 0
    },
    {
      "link": "9b4ed940-4e4f-8602-88ca-84bb33ea034f",
      "group": null,
      "reason": "non_directional",
      "edition": "NAMED_OR_UNRELATED",
      "evidence": "60c22f6d-f1b2-8243-9030-79f5006c2819",
      "direction": "QUALIFY",
      "magnitude": "1.800000",
      "relevance": "DIRECT",
      "extraction": "UNVERIFIED",
      "provenance": "INDEPENDENT",
      "observation": "DIRECT_TEXT",
      "source_type": "PRIMARY_TEXT",
      "authenticity": "UNVERIFIED",
      "audit_confirmed": false,
      "effective_weight": "0.000000",
      "interpretive_steps": 0
    },
    {
      "link": "a0b7275a-0807-8b3b-b8cb-210d7336d48c",
      "group": null,
      "edition": "NAMED_OR_UNRELATED",
      "evidence": "903b5f01-bed0-8d94-9c03-6410176c2eed",
      "direction": "SUPPORT",
      "magnitude": "2.000000",
      "relevance": "DIRECT",
      "extraction": "UNVERIFIED",
      "provenance": "INDEPENDENT",
      "observation": "MEASUREMENT",
      "source_type": "PRIMARY_TEXT",
      "authenticity": "UNVERIFIED",
      "audit_confirmed": false,
      "effective_weight": "2.000000",
      "interpretive_steps": 0
    }
  ],
  "model": "ledger-default@0.3.0",
  "prior": "0.50",
  "variants": {
    "spread": "0.0859",
    "permissive": "0.9821",
    "conservative": "0.8962"
  },
  "code_hash": "sha256:c61a6fdf35a754a0d7e958df149036a083c0eaeb7d2d2e52704ec32b0c36def7",
  "contested": false,
  "stability": "HIGH",
  "claim_type": "QUANTITATIVE",
  "config_hash": "sha256:86768038080b8ab5233f1e4b7aba10af05b5bb44caa432095150b90e81209809",
  "probability": "0.9561",
  "provisional": true,
  "evidence_sum": "3.080000",
  "snapshot_seq": 25820,
  "prior_log_odds": "0.000000",
  "support_groups": 2,
  "model_dependent": false,
  "review_coverage": "0.25",
  "truth_evaluable": true,
  "assessment_state": "SUPPORTED",
  "review_checklist": {
    "qualifiers_reviewed": {
      "by": [],
      "ok": false
    },
    "opposing_search_done": {
      "by": [],
      "ok": false
    },
    "independence_reviewed": {
      "by": [],
      "ok": false
    },
    "primary_source_reviewed": {
      "by": [
        "588b54a7-0982-8ce3-abb6-47f700b5e8eb",
        "869e5742-a692-8852-8b16-d849ea563e3a",
        "9b4ed940-4e4f-8602-88ca-84bb33ea034f",
        "a0b7275a-0807-8b3b-b8cb-210d7336d48c"
      ],
      "ok": true
    }
  },
  "contradict_groups": 0,
  "rounding_boundary": false,
  "posterior_log_odds": "3.080000",
  "not_applicable_reason": null,
  "independence_unreviewed": 4
}